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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs112919177 chr3:125346070 G/A 0.00044 190 13.73 12.5 1.03 KM Plot
LIHC rs113137006 chr12:112418244 T/TA 5.39E-6 192 13.03 14.85 5.17 KM Plot
LIHC rs113189394 chr3:119420393 CT/C 5.1E-12 187 12.9 18.42 0.2 KM Plot
LIHC rs113199390 chr19:9829523 TATAC/T 1.73E-12 186 13.08 20.07 1.03 KM Plot
LIHC rs113203114 chr2:61384324 C/T 2.74E-9 188 13.13 13.92 0.63 KM Plot
LIHC rs113221867 chr1:61451949 A/G 0.000115 189 13.58 10.03 3.37 KM Plot
LIHC rs1133648 chr4:44705595 G/A 1.79E-6 191 3.37 13.57 16.07 KM Plot
LIHC rs1133650 chr4:44705601 T/C 2.82E-6 192 3.37 13.55 16.07 KM Plot
LIHC rs113402074 chr2:201856477 A/AAAAT 0.00047 192 13.58 13.03 11.97 KM Plot
LIHC rs11348201 chr3:125394670 T/TA 0.000394 192 13.78 12.1 1.03 KM Plot
LIHC rs113728172 chr12:112407194 GT/G 0.000167 188 12.57 14.98 6.7 KM Plot
LIHC rs113791471 chr3:119420702 TCAAA/T 5.1E-12 187 12.9 18.42 0.2 KM Plot
LIHC rs113863916 chr12:112405869 A/AAAAC 8.44E-5 189 12.57 14.9 6.7 KM Plot
LIHC rs113875642 chr11:73501256 A/G 1.06E-5 189 13.53 12.43 1.87 KM Plot
LIHC rs11388225 chr4:44726596 A/AT 8.62E-6 191 3.03 13.55 16.07 KM Plot